Programme
17th International Symposium on Integrative Bioinformatics, IB 2023
Campus Pracze: Auditorium in building A
Łukasiewicz Research Network – PORT Polish Center for Technology Development
| 17th International Symposium on Integrative Bioinformatics – Day 1 | |
| 12:30 | Registration |
| 13:15 | Lunch break |
| 14:00 | Closing Keynote Lecture PORT for Health: Neuroscience 2023 – Computational Neuropsychiatry |
| 15:20 | Matchmaking – Neuroscience meets Bioinformatics |
| 16:20 | Coffee break |
| 16:30 | IB Welcome Michał Malewicz Łukasiewicz Research Network – PORT Polish Center for Technology Development Bjorn Sommer Royal College of Art London Andrzej Dybczyński President of Łukasiewicz Research Network |
| 16:45 | Keynote 1: Keywan Hassani-Pak Rothamsted Research, KnetMiner Unveiling the Narratives of Complex Traits and Diseases: Integrative Bioinformatics enhanced with AI. |
| 17:30 | JIB-sponsored Session 1: Ming Chen Zhejiang University Integrating Omics Databases for Enhanced Crop Breeding (JIB.2023.0012). |
| 18:00 | Welcome reception |
| 19:30 | Transfer to the hotels/city |
| 17th International Symposium on Integrative Bioinformatics – Day 2 | |
| 09:00 | Registration |
| 09:30 | Opening: PORT, IB, JIB Celebration Michał Malewicz Łukasiewicz Research Network – PORT Polish Center for Technology Development Bjorn Sommer Royal College of Art London Prof. Dr Ralf Hofestädt Bielefeld Univeristy, Germany Prof. Falk Schreiber University of Konstanz, Germany |
| 09:45 | Keynote 2: Tim Beißbarth Universitätsmedizin Göttingen Leveraging biological networks and explainable machine learning for precision oncology. |
| 10:30 | Talks 1: Modeling & Network Analysis |
| Piotr Hajduk Wroclaw University of Environmental and Life Sciences Modelling gene co-expression in Rattus norvegicus under heat stress. |
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| Marcel Friedrichs Bielefeld University MappingSpy: Automatic analysis of BioDWH2 identifier mapping results. |
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| 11:00 | Coffee break |
| 11:30 | Talks 2: Data Integration |
| Jorge Garcia Brizuela Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Network of federated research data infrastructures (RDI) in the frame of FAIRagro project. |
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| Magdalena Frąszczak Wroclaw University of Environmental and Life Sciences Inheritance analysis of copy number variation polymorphisms in swine genome. |
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| 12:00-14:00 | Lunch & Poster Session |
| Tanvir Hassan RWTH Aachen University Dynamics of Public, Private, and Cheater Strategies in a Microbial Community through The Lens of Rock-Paper-Scissors Toy Model. |
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| Valentin Wesp Friedrich Schiller University Jena | FSU · Department of Mathematics Statistical analysis of synonymous codons and stop as a function of GC content. Comparing pseudo-random sequences with real data. |
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| Piotr Hajduk Wroclaw University of Environmental and Life Sciences Modelling gene co-expression in Rattus norvegicus under heat stress. |
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| Jakub Liu Wroclaw University of Environmental and Life Sciences Modelling the interplay between early life stress, recent stress and genome methylation pattern with the focus on whole-genome significance testing. |
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| Magdalena Frąszczak Wroclaw University of Environmental and Life Sciences Inheritance analysis of copy number variation polymorphisms in swine genome. |
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| Marek Sztuka Wroclaw University of Environmental and Life Sciences Nextflow vs Naive Bash: Different approaches to SNP calling parallelisation on the Whole Genome Bovine Sequence. |
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| Joanna Szyda Wroclaw University of Environmental and Life Sciences Mining the K-mer patterns in whole-genome sequences of Holstein-Friesian cows. |
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| Magda Mielczarek Wroclaw University of Environmental and Life Sciences The effect of transcriptomic annotations in breast cancer DGE study. |
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| Prof. Falk Schreiber, Prof. Dr Ralf Hofestädt, Marcel De Gruyter JIB Poster The effect of transcriptomic annotations in breast cancer DGE study. |
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| 14:00 | Keynote 3: Anna Matuszyńska RWTH Aachen University Germany Computational Models of Photosynthesis: Leveraging Single Time Course to Large-Scale, Heterogeneous Datasets. |
| 14:45 | Talks 3: Synthetic Biology |
| Stefan Schuster Friedrich Schiller University Jena Enumerating Fatty Acids and Aliphatic Amino Acids. |
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| 15:00 | Coffee break |
| 15:30 | Talks 4: Design X Bioinformatics |
| Bjorn Sommer Royal College of Art London Design X Bioinformatics: SBGN 2023 Challenge. |
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| Haoxuan Zhang Royal College of Art London Babelfish – AI-powered Plugin based on SBGN web editor NEWT. |
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| 18:00 | Social event: Conference dinner on Odra river |
| 17th International Symposium on Integrative Bioinformatics – Day 3 | |
| 09:00 | Keynote 4: Janusz Bujnicki Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw Computational modeling of RNA 3D structures and interactions – with and without the use of experimental data. |
| 09:45 | JIB-sponsored Session 2 & Invited Talk |
| Lena Raupach PharmoCo: A Graph-based Visualization of Pharmacogenomic Plausibility Check Reports for Clinical Decision Support Systems (JIB.2023.0026). |
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| Tomasz Kościółek Jagiellonian University Leveraging protein structure information and deep learning to functionally annotate the microbiome. |
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| 10:45 | Coffee break |
| 11:15 | Talks 5: Sequence Analysis & Genomics |
| Marek Sztuka Wroclaw University of Environmental and Life Sciences Nextflow vs Na?ve Bash: Different approaches to SNP calling parallelisation on the Whole Genome Bovine Sequence. |
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| Chanchal K Mitra University of Hyderabad Importance Of The Training Dataset On The Performance Of Machine Learning Toolkits. |
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| 11:45 | Closing |
| 12:15 | Lunch |
| 14:00 | Matchmaking IB 2023 |
| 16:00 | End |
Note to IB2023 participants: PORT for Health Neuroscience 2023 conference will be held on September 4-6, 2023.